PyDigger - unearthing stuff about Python


NameVersionSummarydate
eyck 0.0.14 Multi-omics data integration 2025-01-09 12:12:28
spatools 0.0.4 This comprehensive toolkit enables the analysis of multiple spatial transcriptomics datasets, offering a wide range of analytical capabilities. It supports various types of analyses, including detailed plotting and advanced image analysis, to help you gain deeper insights into your spatial transcriptomics data. 2025-01-05 04:09:08
roma-analysis 0.1.5 Representation and Quantification of Module Activity for bulk and single cell transcriptomics in python 2024-12-19 10:22:34
Pseudovisium 1.0.15 Python package for hexagonal binning of high-resolution spatial transcriptomic data 2024-12-13 14:13:44
scvelo 0.3.3 RNA velocity generalized through dynamical modeling 2024-12-09 07:51:43
enact-SO 0.1.4 ENACT is the first tissue-agnostic pipeline that integrates advanced cell segmentation with Visium HD transcriptomics data to infer cell types across whole tissue sections. This pipeline incorporates novel bin-to-cell assignment methods, enhancing the accuracy of single-cell transcript estimates. 2024-11-20 01:07:58
starfish 0.3.1 Pipelines and pipeline components for the analysis of image-based transcriptomics data 2024-11-14 19:12:29
chromatinhd 0.3.10 High-definition modeling of (single-cell) chromatin + transcriptomics data 2024-11-06 14:45:24
dspin 1.1.2 Regulatory network models from single-cell perturbation profiling 2024-10-22 04:40:02
rubik-spatial 0.0.2 Python package for rapid spatial alignment of spatial transcriptomic datasets 2024-10-18 14:53:01
leesl 0.0.1 Python package implementing the bivariate Lee's L statistic for spatial analysis 2024-10-18 13:27:32
spatialAUC 0.0.8 Python package for gene set enrichment in spatial transcriptomic data 2024-10-12 16:23:53
concordex 1.0.2 Identification of spatial homogeneous regions with concordex 2024-09-30 17:48:03
multivelo 0.1.5 Multi-omic extension of single-cell RNA velocity 2024-09-23 18:46:01
networkcommons 0.4.3 Integrated framework for network inference and evaluation using prior knowledge and omics data 2024-09-17 15:25:05
cospar 0.4.1 A toolkit for dynamic inference of cell fate by integrating state and lineage information. 2024-08-06 13:36:53
decoupler 1.7.0 Ensemble of methods to infer biological activities from omics data 2024-06-20 13:18:32
splicekit 0.6 splicekit: comprehensive toolkit for splicing analysis from short-read RNA-seq 2024-04-25 08:54:31
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